PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000294526
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 606aa    MW: 66713.6 Da    PI: 6.4241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000294526genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30386444259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers++dp+++++tY+g+H+h 
  MDP0000294526 386 ADLWAWRKYGQKPIKGSPHPRNYYRCSTSkGCAARKHVERSTTDPNIFTVTYSGDHTHA 444
                    699***********************9988****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-30371446IPR003657WRKY domain
PROSITE profilePS5081132.719380446IPR003657WRKY domain
SuperFamilySSF1182902.88E-25382446IPR003657WRKY domain
SMARTSM007742.9E-35385445IPR003657WRKY domain
PfamPF031062.6E-25387443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MNVDNVAALL LSCTSLPTSN VFDHMPFKRE LAGRALCRDK TQHSIYPPVV GHARAVVHRP  60
FARGGFLTLT HDGFTLRQPI RFXLGRAYVP TVSAFATVSG PVFDIFTKSA PSFEPLLPYS  120
CNQKPRQNTA AAAVLKMADD WDLYAVVRGC KSTAQTTTNT TAAATTAIVP TTPIHTPSDE  180
FADDPFWDLL ISSDELTDPL FSFPDLDDPK DNDLQEQQQS FFPNPTTTNN NKNNNPSTNN  240
TTFXPNNIIP ISPTISDFGG SSGSGQHHLQ QHQQQHHAQL QQQLQQQQNQ QHHLMPDHFT  300
RGIPAPAFRG IYGQQQQQMM QRGYQILQPR QPQNQQGFMR PGSMNPAYPL PRLPXTMPLH  360
TPRSQRRRRT QQNKKVCEVK AEDLTADLWA WRKYGQKPIK GSPHPRNYYR CSTSKGCAAR  420
KHVERSTTDP NIFTVTYSGD HTHARPTHRN SLAGTSRNKL SAASKCQKQP INNDSGSAAV  480
PNPSSPTTGQ PLTVQAEAVA NKDNSDNSLD KENXEFNDDD EEMDETEYGD EDEDDDVVIP  540
DMDMSDEIFL GQKELGSTSS SGSGSSSMVG ASGDNFLDNV QSSLGSSWTD ANCSSAAGAT  600
VGSGCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A7e-183834461577Probable WRKY transcription factor 4
1wj2_A7e-183834461577Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377624.10.0PREDICTED: probable WRKY transcription factor 27
RefseqXP_009377627.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM5XP715e-98M5XP71_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1888326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-43WRKY DNA-binding protein 27